Qinghai is a mineral resource province, but imbalanced in its mines distribution and different developing levels in minerals and regions. This paper uses system clustering to analyze its minerals from 18 commodities and regions. Coal, oil, gas, potash, brickused clay and construction sand and others are separated categories in a range of 0.57 clustering distance. In a range of 0.7~1.4, iron, lithium and copper are one category, gold and lead are one, nickel, zinc, chrome and manganese are one among 9 metals. In a range of 0.4184-0.6560, mining developing level in regions can be clustered into 3 categories, Haixi and Haidong, Xining and Haibei, Hainan, Huangnan, Yushu & Guoluo. This paper also gives suggestions for developing minerals in different regions.